SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10080639	0.90[CHB][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs10498700	0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs10806931	1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13203959	0.85[JPT][hapmap]
rs13214341	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34865903	0.84[AMR][1000 genomes]
rs4479917	0.91[JPT][hapmap]
rs4569951	0.88[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes]
rs57563898	0.81[AFR][1000 genomes]
rs6936205	1.00[JPT][hapmap]
rs73381509	0.81[ASN][1000 genomes]
rs9295491	0.85[JPT][hapmap]
rs9350318	0.90[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[ASN][1000 genomes]
rs9350319	0.83[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9356762	0.80[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9356764	0.86[JPT][hapmap]
rs9358388	0.81[ASN][1000 genomes]
rs9358391	0.83[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap]
rs9366375	0.90[ASW][hapmap];0.85[CHB][hapmap];0.83[GIH][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9366377	0.80[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9366378	0.85[AMR][1000 genomes]
rs9368275	0.81[ASN][1000 genomes]
rs9368276	0.83[CHB][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)