SNP Report

Basic Infomation

Name	rs2446489 dbSNP
Location	chr:6,21136120
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10946430	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11757294	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11757677	0.85[EUR][1000 genomes]
rs11963640	0.82[EUR][1000 genomes]
rs2013346	0.82[EUR][1000 genomes]
rs2068071	0.83[EUR][1000 genomes]
rs2068072	0.80[EUR][1000 genomes]
rs2446484	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2446487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493869	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4315997	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4401656	0.88[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs4454125	0.88[CEU][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs4479917	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4710964	0.94[YRI][hapmap]
rs4712584	0.88[YRI][hapmap]
rs4712585	0.82[YRI][hapmap]
rs6923546	0.90[CHB][hapmap];0.95[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs6926818	0.93[ASN][1000 genomes]
rs7741436	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7751485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7773318	0.85[ASN][1000 genomes]
rs9295492	0.82[EUR][1000 genomes]
rs9356762	0.84[JPT][hapmap]
rs9356764	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs9356765	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9358393	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9366374	0.85[EUR][1000 genomes]
rs9366377	0.80[JPT][hapmap]
rs9366379	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs9368271	0.85[EUR][1000 genomes]
rs9368276	0.82[JPT][hapmap]
rs959711	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9986662	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)