SNP Report

Basic Infomation

Name	rs6923546 dbSNP
Location	chr:6,21110928
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10080639	0.82[JPT][hapmap]
rs10946430	0.95[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.90[ASN][1000 genomes]
rs11757294	0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs13203959	0.82[JPT][hapmap]
rs2446484	0.85[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2446487	0.90[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs2446489	0.90[CHB][hapmap];0.95[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs2493869	0.90[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs4315997	0.95[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs4479917	0.95[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs4569951	0.84[CHB][hapmap]
rs6926818	0.90[ASN][1000 genomes]
rs7741436	0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7751485	0.90[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs7773318	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9350319	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs9356762	0.92[JPT][hapmap]
rs9356764	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs9356765	0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs9358391	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs9358393	0.90[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.80[TSI][hapmap];0.87[ASN][1000 genomes]
rs9366377	0.80[JPT][hapmap]
rs9366379	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs9368276	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs959711	0.81[ASN][1000 genomes]
rs9986662	0.90[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)