SNP Report
Basic Infomation
| Name | rs4712585 dbSNP |
|---|---|
| Location | chr:6,21108114 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11967298 | 1.00[CHB][hapmap] |
| rs12200487 | 1.00[CHB][hapmap];0.89[CHD][hapmap] |
| rs12526391 | 1.00[JPT][hapmap] |
| rs12528104 | 1.00[JPT][hapmap] |
| rs17835633 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2446489 | 0.82[YRI][hapmap] |
| rs34857211 | 0.81[ASN][1000 genomes] |
| rs4326226 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4624863 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4710964 | 0.89[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes] |
| rs4712584 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes] |
| rs6925464 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6932702 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7739050 | 0.84[ASN][1000 genomes] |
| rs7744319 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9356764 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014