SNP Report
Basic Infomation
| Name | rs6932702 dbSNP |
|---|---|
| Location | chr:6,21142660 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11967298 | 1.00[CHB][hapmap] |
| rs12200487 | 1.00[CHB][hapmap] |
| rs12526391 | 1.00[JPT][hapmap] |
| rs12528104 | 0.82[GIH][hapmap];1.00[JPT][hapmap] |
| rs1466339 | 0.81[CHD][hapmap];0.90[ASN][1000 genomes] |
| rs1466340 | 0.93[ASN][1000 genomes] |
| rs17835633 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28360550 | 0.93[ASN][1000 genomes] |
| rs4710964 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4712584 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4712585 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs62404508 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7744319 | 1.00[CHB][hapmap] |
| rs7746383 | 0.88[ASN][1000 genomes] |
| rs7746846 | 0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014