SNP Report

Basic Infomation

Name	rs9465965 dbSNP
Location	chr:6,21099137
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11757677	0.89[CHB][hapmap]
rs12529531	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16884524	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16884554	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4074910	0.85[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4076112	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs4130033	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs4401656	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4454125	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4574622	0.94[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6456397	0.85[CEU][hapmap];0.84[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6901354	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs6916667	0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6927498	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72838005	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72838010	0.90[EUR][1000 genomes]
rs9295495	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9366379	0.80[CEU][hapmap];0.90[EUR][1000 genomes]
rs9460598	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9460599	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9465966	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9465968	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9465970	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs9465971	0.85[CEU][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9465972	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9986662	0.85[CEU][hapmap];0.92[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)