SNP Report
Basic Infomation
| Name | rs4076112 dbSNP |
|---|---|
| Location | chr:6,21120769 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12529531 | 0.90[ASN][1000 genomes] |
| rs16884524 | 0.98[ASN][1000 genomes] |
| rs16884554 | 0.93[ASN][1000 genomes] |
| rs4074910 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs4401656 | 0.83[CHB][hapmap];0.94[CHD][hapmap];0.82[ASN][1000 genomes] |
| rs4454125 | 0.83[CHB][hapmap];0.94[CHD][hapmap];0.82[ASN][1000 genomes] |
| rs4574622 | 0.94[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs6456397 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs6916667 | 0.93[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs6927498 | 0.95[ASN][1000 genomes] |
| rs6932722 | 0.93[ASN][1000 genomes] |
| rs72838005 | 0.90[ASN][1000 genomes] |
| rs72838010 | 0.93[ASN][1000 genomes] |
| rs9295493 | 0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs9295495 | 0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs9460598 | 0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs9460599 | 0.84[CHB][hapmap];0.92[ASN][1000 genomes] |
| rs9465965 | 0.83[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs9465966 | 0.90[ASN][1000 genomes] |
| rs9465968 | 0.81[ASN][1000 genomes] |
| rs9465970 | 0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs9465971 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs9465972 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| NQO2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014