SNP Report

Basic Infomation

Name	rs4574622 dbSNP
Location	chr:6,21107088
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12529531	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884524	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16884554	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4074910	0.89[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4076112	0.94[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs4130033	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs4401656	0.89[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4454125	0.89[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6456397	0.81[ASW][hapmap];0.90[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6901354	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs6916667	0.87[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6927498	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6932722	0.88[ASN][1000 genomes]
rs72838005	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72838010	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9295493	0.88[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs9295495	0.81[ASW][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9366379	0.85[CEU][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs9460598	0.81[ASW][hapmap];0.84[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9460599	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9465965	0.94[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9465966	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9465968	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9465970	0.90[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9465971	0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9465972	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9986662	0.92[TSI][hapmap];0.88[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)