SNP Report
Basic Infomation
| Name | rs6901354 dbSNP |
|---|---|
| Location | chr:6,21085832 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12529531 | 0.82[EUR][1000 genomes] |
| rs16884524 | 0.81[EUR][1000 genomes] |
| rs4074910 | 0.83[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4130033 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4574622 | 0.94[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs61183631 | 0.84[EUR][1000 genomes] |
| rs6456397 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs6927498 | 0.82[EUR][1000 genomes] |
| rs72838005 | 0.81[EUR][1000 genomes] |
| rs72838010 | 0.82[EUR][1000 genomes] |
| rs9465965 | 0.88[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs9465966 | 0.81[EUR][1000 genomes] |
| rs9465968 | 0.83[EUR][1000 genomes] |
| rs9465970 | 0.82[CEU][hapmap];0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014