SNP Report
Basic Infomation
| Name | rs11981089 dbSNP |
|---|---|
| Location | chr:7,116904228 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10226248 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10226864 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10235236 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10245615 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10255896 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10256129 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10271623 | 0.97[ASN][1000 genomes] |
| rs10280067 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs12706145 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12706147 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13224335 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13227482 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13246951 | 0.86[ASN][1000 genomes] |
| rs1468655 | 0.97[ASN][1000 genomes] |
| rs1860698 | 0.97[ASN][1000 genomes] |
| rs2402176 | 0.90[ASN][1000 genomes] |
| rs34911130 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs38904 | 0.87[TSI][hapmap] |
| rs38905 | 0.87[TSI][hapmap] |
| rs38909 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs38911 | 0.87[TSI][hapmap] |
| rs38916 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4727845 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4730773 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4730775 | 0.92[CEU][hapmap];0.82[CHD][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs6466605 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6466606 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6466607 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6942558 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6944152 | 0.86[ASN][1000 genomes] |
| rs6946781 | 0.86[CHB][hapmap] |
| rs6947786 | 0.97[ASN][1000 genomes] |
| rs6950776 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6951125 | 0.92[CEU][hapmap];0.87[CHD][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6958283 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6965467 | 0.83[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs6968768 | 0.97[ASN][1000 genomes] |
| rs6974937 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6975501 | 0.97[ASN][1000 genomes] |
| rs718738 | 0.94[ASN][1000 genomes] |
| rs7457422 | 0.92[CHB][hapmap];0.95[JPT][hapmap] |
| rs7776963 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs7795841 | 0.86[ASN][1000 genomes] |
| rs7802930 | 0.94[ASN][1000 genomes] |
| rs9691008 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9692365 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014