SNP Report
Name | rs38904   dbSNP |
---|---|
Location | chr:7,116892846 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10241082 | 0.85[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
rs10262178 | 0.85[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
rs10272540 | 0.82[ASN][1000 genomes] |
rs11981089 | 0.87[TSI][hapmap] |
rs38905 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs38906 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs38907 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs38908 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs38910 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs38911 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4282508 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs4403349 | 0.85[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes] |
rs4587271 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs4612282 | 0.85[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes] |
rs4632997 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs55712256 | 0.87[ASN][1000 genomes] |
rs56863440 | 0.97[ASN][1000 genomes] |
rs57237256 | 0.88[ASN][1000 genomes] |
rs59383324 | 0.87[ASN][1000 genomes] |
rs66547623 | 0.88[ASN][1000 genomes] |
rs718737 | 0.85[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes] |
rs9656249 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
TES | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
ITK | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014