SNP Report
Basic Infomation
| Name | rs6965467 dbSNP |
|---|---|
| Location | chr:7,116899294 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10226864 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10235236 | 1.00[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10245615 | 0.85[JPT][hapmap] |
| rs10255896 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10256129 | 1.00[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10271623 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10280067 | 1.00[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11760825 | 0.84[ASN][1000 genomes] |
| rs11981089 | 0.83[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs13224335 | 0.86[ASN][1000 genomes] |
| rs1468655 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1860698 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2402176 | 0.80[ASN][1000 genomes] |
| rs38909 | 0.86[ASN][1000 genomes] |
| rs38916 | 0.84[ASN][1000 genomes] |
| rs6466605 | 0.90[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.80[MEX][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6466606 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6466607 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6942558 | 0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6946781 | 0.89[GIH][hapmap];0.89[TSI][hapmap];0.80[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs6947786 | 0.82[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6958283 | 0.95[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6968768 | 0.82[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6974937 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6975501 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6979800 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs718738 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7457422 | 0.86[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap] |
| rs7776963 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7802930 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MTND4P6 | Proximal transcriptional regulation |
| TES | Distal transcriptional regulation |
| ST7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014