SNP Report
Basic Infomation
| Name | rs38909 dbSNP |
|---|---|
| Location | chr:7,116894960 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10226248 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10226864 | 0.97[ASN][1000 genomes] |
| rs10235236 | 0.97[ASN][1000 genomes] |
| rs10255896 | 0.97[ASN][1000 genomes] |
| rs10256129 | 0.97[ASN][1000 genomes] |
| rs10271623 | 0.97[ASN][1000 genomes] |
| rs10280067 | 0.97[ASN][1000 genomes] |
| rs11981089 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12706145 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12706147 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13224335 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13227482 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs13246951 | 0.86[ASN][1000 genomes] |
| rs1468655 | 0.97[ASN][1000 genomes] |
| rs1860698 | 0.97[ASN][1000 genomes] |
| rs2402176 | 0.90[ASN][1000 genomes] |
| rs34911130 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs38916 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4727845 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4730773 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4730775 | 0.85[EUR][1000 genomes] |
| rs6466605 | 0.97[ASN][1000 genomes] |
| rs6466606 | 0.97[ASN][1000 genomes] |
| rs6466607 | 0.97[ASN][1000 genomes] |
| rs6942558 | 0.97[ASN][1000 genomes] |
| rs6944152 | 0.86[ASN][1000 genomes] |
| rs6947786 | 0.97[ASN][1000 genomes] |
| rs6950776 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6951125 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6958283 | 0.96[ASN][1000 genomes] |
| rs6965467 | 0.86[ASN][1000 genomes] |
| rs6968768 | 0.97[ASN][1000 genomes] |
| rs6974937 | 0.97[ASN][1000 genomes] |
| rs6975501 | 0.97[ASN][1000 genomes] |
| rs718738 | 0.94[ASN][1000 genomes] |
| rs7776963 | 0.97[ASN][1000 genomes] |
| rs7795841 | 0.86[ASN][1000 genomes] |
| rs7802930 | 0.94[ASN][1000 genomes] |
| rs9691008 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9692365 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014