SNP Report
Basic Infomation
| Name | rs34911130 dbSNP |
|---|---|
| Location | chr:7,116907379 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10226248 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11981089 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12706145 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12706147 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs13224335 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13227482 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs38909 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs38916 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4727845 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4730773 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4730775 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6946781 | 0.97[ASN][1000 genomes] |
| rs6950776 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6951125 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6979800 | 0.98[ASN][1000 genomes] |
| rs9691008 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9692365 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000230605 | Proximal transcriptional regulation |
| ENSG00000230785 | Proximal transcriptional regulation |
| TES | Distal transcriptional regulation |
| ST7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014