SNP Report
Name | rs6946781   dbSNP |
---|---|
Location | chr:7,116907743 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10226864 | 0.86[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10235236 | 1.00[ASW][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs10245615 | 0.92[CHB][hapmap] |
rs10255896 | 0.86[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10256129 | 1.00[ASW][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];0.99[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10271623 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs10280067 | 1.00[ASW][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs11981089 | 0.86[CHB][hapmap] |
rs1468655 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1860698 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs34911130 | 0.97[ASN][1000 genomes] |
rs6466605 | 0.84[ASW][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap] |
rs6466606 | 0.86[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs6466607 | 0.86[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs6942558 | 0.86[CHB][hapmap] |
rs6958283 | 1.00[ASW][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.99[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs6965467 | 0.89[GIH][hapmap];0.89[TSI][hapmap];0.80[YRI][hapmap];0.82[AMR][1000 genomes] |
rs6974937 | 0.86[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs6975501 | 0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs6979800 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs718738 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs7776963 | 0.84[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs7802930 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000230605 | Proximal transcriptional regulation |
ENSG00000230785 | Proximal transcriptional regulation |
TES | Distal transcriptional regulation |
ST7 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014