SNP Report
Name | rs6466605   dbSNP |
---|---|
Location | chr:7,116901864 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10226864 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs10235236 | 0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs10245615 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10255896 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs10256129 | 0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs10271623 | 0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs10280067 | 0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs11760825 | 0.92[EUR][1000 genomes] |
rs11981089 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
rs12706145 | 0.83[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap] |
rs13224335 | 0.97[ASN][1000 genomes] |
rs13246951 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1468655 | 0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs1860698 | 0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2402176 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs38909 | 0.97[ASN][1000 genomes] |
rs38916 | 0.95[ASN][1000 genomes] |
rs6466606 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs6466607 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs6942558 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6944152 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6946781 | 0.84[ASW][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap] |
rs6947786 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6958283 | 0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs6965467 | 0.90[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.80[MEX][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs6968768 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6974937 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs6975501 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs6979800 | 0.82[AMR][1000 genomes] |
rs718738 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs7457422 | 0.92[CHB][hapmap];0.95[JPT][hapmap] |
rs7776963 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7795841 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7802930 | 0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MTND4P6 | Proximal transcriptional regulation |
TES | Distal transcriptional regulation |
ST7 | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
GPR85 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014