SNP Report
Basic Infomation
| Name | rs7457422 dbSNP |
|---|---|
| Location | chr:7,116903530 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10226864 | 0.86[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap] |
| rs10235236 | 0.86[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap] |
| rs10245615 | 0.92[CHB][hapmap];0.95[JPT][hapmap] |
| rs10255896 | 0.86[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap] |
| rs10256129 | 0.86[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap] |
| rs10280067 | 0.86[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap] |
| rs11981089 | 0.92[CHB][hapmap];0.95[JPT][hapmap] |
| rs1468655 | 0.86[CEU][hapmap] |
| rs6466605 | 0.92[CHB][hapmap];0.95[JPT][hapmap] |
| rs6466606 | 0.86[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap] |
| rs6466607 | 0.86[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap] |
| rs6942558 | 0.93[CHB][hapmap];0.95[JPT][hapmap] |
| rs6958283 | 0.91[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap] |
| rs6965467 | 0.86[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap] |
| rs6974937 | 0.86[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap] |
| rs7776963 | 0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MTND4P6 | Proximal transcriptional regulation |
| TES | Distal transcriptional regulation |
| ST7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014