SNP Report
Basic Infomation
| Name | rs4730775 dbSNP |
|---|---|
| Location | chr:7,116917118 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10226248 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10245615 | 0.96[CEU][hapmap] |
| rs11981089 | 0.92[CEU][hapmap];0.82[CHD][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs12706145 | 0.96[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12706147 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13224335 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13227482 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2215552 | 0.83[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs34911130 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs38909 | 0.85[EUR][1000 genomes] |
| rs38916 | 0.85[EUR][1000 genomes] |
| rs4727845 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4730773 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6950776 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6951125 | 0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9691008 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9692365 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WNT2 | Proximal transcriptional regulation |
| WNT2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014