SNP Report

Basic Infomation

Name	rs11085732 dbSNP
Location	chr:19,10533112
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10854116	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11085731	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11670504	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11878501	0.84[ASN][1000 genomes]
rs11881782	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12611227	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[ASN][1000 genomes]
rs12977594	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12978105	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12978984	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12982179	0.84[CEU][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes]
rs12983665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1352426	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs1387025	0.94[ASN][1000 genomes]
rs17697965	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2043330	0.85[EUR][1000 genomes]
rs2129944	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2633971	0.96[ASN][1000 genomes]
rs280519	0.86[JPT][hapmap]
rs34159543	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34246431	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34266232	0.81[ASN][1000 genomes]
rs34681319	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35615354	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35916055	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3760650	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs477174	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4804133	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs513663	0.93[ASN][1000 genomes]
rs6417247	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6511698	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7247893	0.85[ASN][1000 genomes]
rs7249459	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7253185	0.87[EUR][1000 genomes]
rs7253917	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7260594	0.87[EUR][1000 genomes]
rs753859	0.86[ASN][1000 genomes]
rs8112449	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8112675	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9807913	0.81[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDC37	Proximal transcriptional regulation
ICAM1	Distal transcriptional regulation
RAVER1	Distal transcriptional regulation
ICAM3	Distal transcriptional regulation
PDE4A	Distal transcriptional regulation
CDC37	Distal transcriptional regulation
MIR1181	Distal transcriptional regulation
CDKN2D	Distal transcriptional regulation
ILF3-AS1	Distal transcriptional regulation
PDE4A	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)