SNP Report
Basic Infomation
| Name | rs753859 dbSNP |
|---|---|
| Location | chr:19,10531224 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10854116 | 0.88[ASN][1000 genomes] |
| rs11085732 | 0.86[ASN][1000 genomes] |
| rs11670504 | 0.81[ASN][1000 genomes] |
| rs11881782 | 0.89[ASN][1000 genomes] |
| rs12977594 | 0.88[ASN][1000 genomes] |
| rs12978105 | 0.86[ASN][1000 genomes] |
| rs12978984 | 0.88[ASN][1000 genomes] |
| rs12983665 | 0.81[ASN][1000 genomes] |
| rs1352426 | 0.82[ASN][1000 genomes] |
| rs1387025 | 0.82[ASN][1000 genomes] |
| rs17697965 | 0.88[ASN][1000 genomes] |
| rs2633971 | 0.89[ASN][1000 genomes] |
| rs34159543 | 0.85[ASN][1000 genomes] |
| rs34246431 | 0.80[ASN][1000 genomes] |
| rs35916055 | 0.87[ASN][1000 genomes] |
| rs477174 | 0.81[ASN][1000 genomes] |
| rs4804133 | 0.81[ASN][1000 genomes] |
| rs513663 | 0.81[ASN][1000 genomes] |
| rs6417247 | 0.88[ASN][1000 genomes] |
| rs6511698 | 0.89[ASN][1000 genomes] |
| rs7253917 | 0.88[ASN][1000 genomes] |
| rs8112675 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDE4A | Proximal transcriptional regulation |
| CDC37 | Proximal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| KEAP1 | Distal transcriptional regulation |
| ANGPTL6 | Distal transcriptional regulation |
| EIF3G | Distal transcriptional regulation |
| MRPL4 | Distal transcriptional regulation |
| ICAM4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| MIR1181 | Distal transcriptional regulation |
| SLC44A2 | Distal transcriptional regulation |
| ATG4D | Distal transcriptional regulation |
| CDKN2D | Distal transcriptional regulation |
| RNU7-1 | Distal transcriptional regulation |
| C12orf57 | Distal transcriptional regulation |
| VDR | Distal transcriptional regulation |
| PDE4A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014