SNP Report
Basic Infomation
| Name | rs6511698 dbSNP |
|---|---|
| Location | chr:19,10526009 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10854116 | 0.98[ASN][1000 genomes] |
| rs11085731 | 0.83[ASN][1000 genomes] |
| rs11085732 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11670504 | 1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[ASN][1000 genomes] |
| rs11878501 | 0.86[ASN][1000 genomes] |
| rs11881782 | 0.99[ASN][1000 genomes] |
| rs12611227 | 0.87[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs12977594 | 0.98[ASN][1000 genomes] |
| rs12978105 | 1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.96[ASN][1000 genomes] |
| rs12978984 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs12983665 | 0.91[ASN][1000 genomes] |
| rs1352426 | 0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1387025 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17697965 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[ASN][1000 genomes] |
| rs2129944 | 0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap] |
| rs2358681 | 0.88[CHD][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap] |
| rs2633971 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs280519 | 0.86[JPT][hapmap] |
| rs34159543 | 0.95[ASN][1000 genomes] |
| rs34246431 | 0.90[ASN][1000 genomes] |
| rs34266232 | 0.84[ASN][1000 genomes] |
| rs34681319 | 0.87[ASN][1000 genomes] |
| rs35615354 | 0.82[ASN][1000 genomes] |
| rs35916055 | 0.98[ASN][1000 genomes] |
| rs3760650 | 0.87[ASN][1000 genomes] |
| rs477174 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4804133 | 0.91[ASN][1000 genomes] |
| rs4804134 | 0.83[CHD][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap] |
| rs513663 | 0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs55765999 | 0.83[ASN][1000 genomes] |
| rs6417247 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[ASN][1000 genomes] |
| rs7247893 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7249459 | 0.87[ASN][1000 genomes] |
| rs7253917 | 0.98[ASN][1000 genomes] |
| rs753859 | 0.89[ASN][1000 genomes] |
| rs8112449 | 0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[MEX][hapmap];0.84[ASN][1000 genomes] |
| rs8112675 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDE4A | Proximal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| ENSG00000267105 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| MIR1181 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014