SNP Report
Basic Infomation
| Name | rs4804134 dbSNP |
|---|---|
| Location | chr:19,10568519 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11085734 | 0.82[ASN][1000 genomes] |
| rs11666263 | 0.81[CHB][hapmap] |
| rs11670504 | 0.81[CHD][hapmap];0.85[MEX][hapmap] |
| rs12978105 | 0.83[CHD][hapmap] |
| rs1352426 | 0.80[CHB][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs1387025 | 0.86[EUR][1000 genomes] |
| rs17697965 | 0.83[CHD][hapmap] |
| rs2129944 | 0.81[GIH][hapmap] |
| rs2358681 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs477174 | 0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs513663 | 0.94[EUR][1000 genomes] |
| rs6417247 | 0.83[CHD][hapmap] |
| rs6511698 | 0.83[CHD][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap] |
| rs7247481 | 0.82[ASN][1000 genomes] |
| rs9807913 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDE4A | Proximal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| PDE4A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014