SNP Report
Basic Infomation
| Name | rs2129944 dbSNP |
|---|---|
| Location | chr:19,10516198 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11085732 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs11670504 | 0.87[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap] |
| rs11879191 | 0.91[CHB][hapmap];0.84[CHD][hapmap] |
| rs12611227 | 1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap] |
| rs12978105 | 0.87[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap] |
| rs12978984 | 0.90[CHB][hapmap];0.95[JPT][hapmap] |
| rs12982179 | 0.91[CHB][hapmap];0.84[CHD][hapmap] |
| rs1352426 | 0.90[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap] |
| rs17697965 | 0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap] |
| rs2358681 | 0.81[GIH][hapmap] |
| rs280519 | 0.81[JPT][hapmap] |
| rs477174 | 0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap] |
| rs4804134 | 0.81[GIH][hapmap] |
| rs6417247 | 0.87[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap] |
| rs6511698 | 0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap] |
| rs7256672 | 0.83[CHB][hapmap] |
| rs8112449 | 0.86[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDC37 | Proximal transcriptional regulation |
| MIR1181 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014