SNP Report
Basic Infomation
| Name | rs280519 dbSNP |
|---|---|
| Location | chr:19,10472933 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11085732 | 0.86[JPT][hapmap] |
| rs11670504 | 0.86[JPT][hapmap] |
| rs12611227 | 0.86[JPT][hapmap] |
| rs12978105 | 0.86[JPT][hapmap] |
| rs12978984 | 0.84[JPT][hapmap] |
| rs17697965 | 0.86[JPT][hapmap] |
| rs2129944 | 0.81[JPT][hapmap] |
| rs280496 | 0.83[YRI][hapmap] |
| rs280497 | 0.88[EUR][1000 genomes] |
| rs280525 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs280526 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs477174 | 0.86[JPT][hapmap] |
| rs6417247 | 0.86[JPT][hapmap] |
| rs6511698 | 0.86[JPT][hapmap] |
| rs91755 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TYK2 | Proximal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| TYK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014