SNP Report
Basic Infomation
| Name | rs12982179 dbSNP |
|---|---|
| Location | chr:19,10512400 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10854116 | 0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11085730 | 0.90[ASN][1000 genomes] |
| rs11085731 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11085732 | 0.84[CEU][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs11669299 | 0.86[ASN][1000 genomes] |
| rs11670504 | 0.84[GIH][hapmap] |
| rs11670704 | 0.84[ASN][1000 genomes] |
| rs11878501 | 0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11879191 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs11880990 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11881782 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12611227 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12977594 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12978105 | 0.87[ASW][hapmap];0.91[CEU][hapmap];0.85[GIH][hapmap];0.87[LWK][hapmap];0.90[MKK][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12978984 | 0.85[CHB][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12983665 | 0.86[AMR][1000 genomes] |
| rs12983921 | 0.85[ASN][1000 genomes] |
| rs1352426 | 0.81[CHB][hapmap] |
| rs17697965 | 0.87[ASW][hapmap];0.91[CEU][hapmap];0.85[GIH][hapmap];0.91[LWK][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2129944 | 0.91[CHB][hapmap];0.84[CHD][hapmap] |
| rs2304256 | 0.85[JPT][hapmap] |
| rs34159543 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs34266232 | 0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs34681319 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34953890 | 0.94[ASN][1000 genomes] |
| rs35164067 | 0.95[ASN][1000 genomes] |
| rs35615354 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35916055 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3760650 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs55765999 | 0.80[ASN][1000 genomes] |
| rs6417247 | 0.87[ASW][hapmap];0.91[CEU][hapmap];0.85[GIH][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7253917 | 0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7256672 | 0.91[CHB][hapmap] |
| rs8112449 | 0.87[ASW][hapmap];0.91[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs8112675 | 0.85[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ICAM4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| ICAM1 | Distal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| KRI1 | Distal transcriptional regulation |
| MIR4322 | Distal transcriptional regulation |
| ENSG00000267105 | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| CDC37 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014