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rVarBase
SNP Report
Basic Infomation
Name
rs2304256  
dbSNP
Location
chr:19,10475652
Allele
C/A
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11085725
0.92[EUR][1000 genomes]
rs11085727
0.93[EUR][1000 genomes]
rs11879191
0.85[JPT][hapmap]
rs12720270
0.93[ASN][1000 genomes]
rs12982179
0.85[JPT][hapmap]
rs34725611
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8112449
0.85[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
TYK2
Proximal transcriptional regulation
ENSG00000267105
Distal transcriptional regulation
ICAM1
Distal transcriptional regulation
TYK2
Distal transcriptional regulation
TYK2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
TUBB4
SCAN
LOC113230
SCAN