SNP Report
Basic Infomation
| Name | rs34159543 dbSNP |
|---|---|
| Location | chr:19,10518941 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10854116 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11085731 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11085732 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11670504 | 0.87[ASN][1000 genomes] |
| rs11878501 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11880990 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11881782 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12611227 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12977594 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12978105 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12978984 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12982179 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12983665 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1352426 | 0.87[ASN][1000 genomes] |
| rs1387025 | 0.87[ASN][1000 genomes] |
| rs17697965 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2633971 | 0.95[ASN][1000 genomes] |
| rs34246431 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34266232 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34681319 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35615354 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs35916055 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3760650 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs477174 | 0.86[ASN][1000 genomes] |
| rs4804133 | 0.80[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs513663 | 0.86[ASN][1000 genomes] |
| rs55765999 | 0.82[ASN][1000 genomes] |
| rs6417247 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6511698 | 0.95[ASN][1000 genomes] |
| rs7247893 | 0.89[ASN][1000 genomes] |
| rs7249459 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7253917 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs753859 | 0.85[ASN][1000 genomes] |
| rs8112449 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs8112675 | 0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDC37 | Proximal transcriptional regulation |
| MIR1181 | Proximal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| MIR1181 | Distal transcriptional regulation |
| KEAP1 | Distal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014