SNP Report
Basic Infomation
| Name | rs11878501 dbSNP |
|---|---|
| Location | chr:19,10502574 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10854116 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11085730 | 0.81[ASN][1000 genomes] |
| rs11085731 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11085732 | 0.84[ASN][1000 genomes] |
| rs11879191 | 0.83[ASN][1000 genomes] |
| rs11880990 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11881782 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12611227 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12977594 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12978105 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12978984 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12982179 | 0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17697965 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2633971 | 0.86[ASN][1000 genomes] |
| rs34159543 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34266232 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34681319 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs34953890 | 0.81[ASN][1000 genomes] |
| rs35164067 | 0.83[ASN][1000 genomes] |
| rs35615354 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs35916055 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3760650 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs55765999 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6417247 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6511698 | 0.86[ASN][1000 genomes] |
| rs7247893 | 0.81[ASN][1000 genomes] |
| rs7253917 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs8112449 | 0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000267105 | Distal transcriptional regulation |
| ICAM1 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| MRPL4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| CDC37 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014