SNP Report
Basic Infomation
| Name | rs2043330 dbSNP |
|---|---|
| Location | chr:19,10553618 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11085732 | 0.85[EUR][1000 genomes] |
| rs11670504 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11670704 | 0.86[ASN][1000 genomes] |
| rs12983665 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12983921 | 0.85[ASN][1000 genomes] |
| rs1352426 | 0.80[ASN][1000 genomes] |
| rs1387025 | 0.80[ASN][1000 genomes] |
| rs34246431 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35615354 | 0.85[ASN][1000 genomes] |
| rs477174 | 0.81[ASN][1000 genomes] |
| rs4804133 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7249459 | 0.86[EUR][1000 genomes] |
| rs7253185 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7260594 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8112449 | 0.87[ASN][1000 genomes] |
| rs8112675 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9807913 | 0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDE4A | Distal transcriptional regulation |
| PDE4A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014