SNP Report
Basic Infomation
| Name | rs10788338 dbSNP |
|---|---|
| Location | chr:10,81733022 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1054053 | 0.85[CEU][hapmap] |
| rs10887327 | 0.82[ASN][1000 genomes] |
| rs11201011 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11201038 | 0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1885550 | 0.86[CHD][hapmap] |
| rs1923540 | 0.81[CEU][hapmap] |
| rs2243639 | 0.81[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap] |
| rs2250617 | 0.85[CEU][hapmap] |
| rs2255601 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2258874 | 0.81[CEU][hapmap] |
| rs2341958 | 0.90[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2758541 | 0.81[CEU][hapmap] |
| rs2758545 | 0.81[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs2758547 | 0.80[EUR][1000 genomes] |
| rs2758555 | 0.81[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap] |
| rs2758556 | 0.81[CEU][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap] |
| rs2758561 | 0.81[CEU][hapmap] |
| rs2819096 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2819097 | 0.81[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs2819098 | 0.81[EUR][1000 genomes] |
| rs2819099 | 0.81[EUR][1000 genomes] |
| rs2819100 | 0.81[EUR][1000 genomes] |
| rs2819101 | 0.81[EUR][1000 genomes] |
| rs2819106 | 0.81[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs2819107 | 0.81[CEU][hapmap] |
| rs2819108 | 0.81[CEU][hapmap] |
| rs4281433 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4319455 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4335482 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs721917 | 0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs7476563 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7903576 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9421727 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000235924 | Distal transcriptional regulation |
| SFTPD | Distal transcriptional regulation |
| ENSG00000225100 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014