SNP Report
Basic Infomation
| Name | rs11201038 dbSNP |
|---|---|
| Location | chr:10,81746277 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10788338 | 0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10887327 | 0.84[ASN][1000 genomes] |
| rs11201011 | 0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1885550 | 0.84[CHD][hapmap] |
| rs2255601 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2341958 | 0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2819096 | 0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[ASN][1000 genomes] |
| rs4281433 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4319455 | 0.93[ASN][1000 genomes] |
| rs4335482 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs721917 | 0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7476563 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7903576 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SFTPD | Proximal transcriptional regulation |
| ENSG00000225100 | Proximal transcriptional regulation |
| SFTPD | Distal transcriptional regulation |
| ENSG00000225100 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SH2D4B | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014