SNP Report

Basic Infomation

Name	rs4335482 dbSNP
Location	chr:10,81743578
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1054053	0.89[CEU][hapmap]
rs10788338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10887327	0.81[ASN][1000 genomes]
rs11201011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11201038	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1923540	0.85[CEU][hapmap]
rs2243639	0.84[CEU][hapmap]
rs2250617	0.89[CEU][hapmap]
rs2255601	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2258874	0.85[CEU][hapmap]
rs2341958	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2758541	0.85[CEU][hapmap]
rs2758545	0.85[CEU][hapmap]
rs2758555	0.84[CEU][hapmap]
rs2758556	0.84[CEU][hapmap]
rs2758561	0.85[CEU][hapmap]
rs2819096	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2819097	0.85[CEU][hapmap]
rs2819106	0.84[CEU][hapmap]
rs2819107	0.86[CEU][hapmap]
rs2819108	0.85[CEU][hapmap]
rs4281433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4319455	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs721917	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7476563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7903576	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9421727	0.85[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
SFTPD	Proximal transcriptional regulation
ENSG00000225100	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)