SNP Report
Basic Infomation
| Name | rs2243639 dbSNP |
|---|---|
| Location | chr:10,81701722 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 58)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1054053 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10788338 | 0.81[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap] |
| rs11201011 | 0.81[CEU][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap] |
| rs1570328 | 0.80[ASN][1000 genomes] |
| rs1923538 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1923540 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1923541 | 0.84[CHB][hapmap];0.93[CHD][hapmap];0.81[ASN][1000 genomes] |
| rs2146189 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2245121 | 0.84[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs2245545 | 0.84[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs2246111 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2247069 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2250473 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2250617 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2250774 | 0.94[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2250992 | 0.84[CHB][hapmap];0.81[CHD][hapmap] |
| rs2254402 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2255601 | 0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2256574 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2257414 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2258874 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2260653 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2341958 | 0.82[TSI][hapmap] |
| rs2475634 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2493719 | 0.94[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2493723 | 0.81[ASN][1000 genomes] |
| rs2493724 | 0.81[EUR][1000 genomes] |
| rs2493726 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2758539 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2758541 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2758542 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2758545 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2758547 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2758550 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2758552 | 0.81[ASN][1000 genomes] |
| rs2758555 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2758556 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2758558 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2758561 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2819096 | 0.91[MEX][hapmap];0.81[TSI][hapmap] |
| rs2819097 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2819098 | 0.94[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2819099 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2819100 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2819101 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2819102 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2819104 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2819106 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2819107 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs2819108 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap] |
| rs4335482 | 0.84[CEU][hapmap] |
| rs55684723 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs55975359 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs56311055 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7070197 | 0.91[AMR][1000 genomes] |
| rs7905105 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7914360 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9421727 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MBL1P | Distal transcriptional regulation |
| MBL1P | RNA binding protein mediated regulation |
| SFTPD | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 14)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014