SNP Report
Basic Infomation
| Name | rs2341958 dbSNP |
|---|---|
| Location | chr:10,81759954 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10788338 | 0.90[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10887327 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11201011 | 0.90[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11201038 | 0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2243639 | 0.82[TSI][hapmap] |
| rs2255601 | 0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs2758555 | 0.82[TSI][hapmap] |
| rs2758556 | 0.81[TSI][hapmap] |
| rs2819096 | 0.90[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs2819106 | 0.82[TSI][hapmap] |
| rs4281433 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4319455 | 0.91[ASN][1000 genomes] |
| rs4335482 | 0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs721917 | 0.86[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7476563 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7903576 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000235924 | Distal transcriptional regulation |
| SFTPD | Distal transcriptional regulation |
| ENSG00000225100 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014