SNP Report
Basic Infomation
| Name | rs2819096 dbSNP |
|---|---|
| Location | chr:10,81707613 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1054053 | 0.81[CEU][hapmap] |
| rs10788338 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11201011 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11201038 | 0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[ASN][1000 genomes] |
| rs1885550 | 0.86[CHD][hapmap] |
| rs2243639 | 0.91[MEX][hapmap];0.81[TSI][hapmap] |
| rs2250617 | 0.81[CEU][hapmap] |
| rs2255601 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2341958 | 0.90[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs2758555 | 0.91[MEX][hapmap];0.81[TSI][hapmap] |
| rs2758556 | 0.86[MEX][hapmap] |
| rs2819106 | 0.91[MEX][hapmap];0.81[TSI][hapmap] |
| rs4281433 | 0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4319455 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4335482 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs721917 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs7476563 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7903576 | 0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MBL1P | RNA binding protein mediated regulation |
| SFTPD | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014