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rVarBase
SNP Report
Basic Infomation
Name
rs1885550  
dbSNP
Location
chr:10,81712440
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10788338
0.86[CHD][hapmap]
rs10887199
0.80[TSI][hapmap]
rs11201011
0.88[CHD][hapmap]
rs11201038
0.84[CHD][hapmap]
rs1885551
0.84[TSI][hapmap]
rs2181204
0.84[TSI][hapmap]
rs2819096
0.86[CHD][hapmap]
rs7072378
1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721917
0.86[CHD][hapmap]
rs726014
0.84[TSI][hapmap]
rSNP related genes
Symbol
Regulation type
SFTPD
Proximal transcriptional regulation
SFTPD
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
TSPAN14
SCAN