SNP Report

Basic Infomation

Name	rs2255601 dbSNP
Location	chr:10,81704559
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1054053	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs10788338	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11201011	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11201038	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1923538	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1923540	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2146189	0.80[EUR][1000 genomes]
rs2243639	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2246111	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2247069	0.81[EUR][1000 genomes]
rs2250473	0.81[EUR][1000 genomes]
rs2250617	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs2256574	0.88[EUR][1000 genomes]
rs2258874	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs2260653	0.80[EUR][1000 genomes]
rs2341958	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2475634	0.81[EUR][1000 genomes]
rs2758541	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs2758545	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2758547	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2758550	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2758555	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2758556	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2758558	0.84[EUR][1000 genomes]
rs2758561	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs2819096	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2819097	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2819098	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2819099	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2819100	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2819101	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2819102	0.88[EUR][1000 genomes]
rs2819104	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2819106	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs2819107	0.82[CEU][hapmap]
rs2819108	0.82[CEU][hapmap]
rs4281433	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4319455	0.97[ASN][1000 genomes]
rs4335482	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55684723	0.80[EUR][1000 genomes]
rs55975359	0.80[EUR][1000 genomes]
rs56311055	0.80[EUR][1000 genomes]
rs721917	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7476563	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7903576	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7905105	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9421727	0.82[CEU][hapmap];0.80[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MBL1P	RNA binding protein mediated regulation
SFTPD	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)