SNP Report
Basic Infomation
| Name | rs2819108 dbSNP |
|---|---|
| Location | chr:10,81662092 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1054053 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10788338 | 0.81[CEU][hapmap] |
| rs11201011 | 0.81[CEU][hapmap] |
| rs1923540 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs1923541 | 0.89[CHB][hapmap];0.81[JPT][hapmap] |
| rs2243639 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap] |
| rs2245121 | 0.84[CHB][hapmap];0.81[JPT][hapmap] |
| rs2245545 | 0.80[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap] |
| rs2250617 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2250774 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs2250992 | 0.89[CHB][hapmap];0.86[JPT][hapmap] |
| rs2255601 | 0.82[CEU][hapmap] |
| rs2256588 | 0.80[CEU][hapmap] |
| rs2258874 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2493719 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2758541 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2758545 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap] |
| rs2758555 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs2758556 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs2758561 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2819097 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap] |
| rs2819098 | 0.94[CHB][hapmap];0.95[JPT][hapmap] |
| rs2819106 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2819107 | 1.00[CEU][hapmap] |
| rs4335482 | 0.85[CEU][hapmap] |
| rs9421727 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASAH2B | Proximal transcriptional regulation |
| MBL1P | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014