SNP Report
Basic Infomation
| Name | rs2256588 dbSNP |
|---|---|
| Location | chr:10,81684795 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1923537 | 0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1923540 | 0.80[CEU][hapmap] |
| rs1923542 | 0.84[ASN][1000 genomes] |
| rs2146188 | 0.82[ASN][1000 genomes] |
| rs2246698 | 0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2250135 | 0.84[ASN][1000 genomes] |
| rs2250360 | 0.83[ASN][1000 genomes] |
| rs2256167 | 0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2256573 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2256581 | 0.91[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2256703 | 0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2258874 | 0.80[CEU][hapmap] |
| rs2758541 | 0.80[CEU][hapmap] |
| rs2758551 | 0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2758553 | 0.89[ASN][1000 genomes] |
| rs2758554 | 0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2758557 | 0.86[ASN][1000 genomes] |
| rs2758561 | 0.80[CEU][hapmap] |
| rs2819097 | 0.80[CEU][hapmap] |
| rs2819105 | 0.91[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2819107 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2819108 | 0.80[CEU][hapmap] |
| rs7893691 | 0.89[ASN][1000 genomes] |
| rs9421727 | 0.80[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MBL1P | Distal transcriptional regulation |
| MBL1P | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014