SNP Report
Basic Infomation
| Name | rs1923537 dbSNP |
|---|---|
| Location | chr:10,81695208 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1923542 | 0.85[ASN][1000 genomes] |
| rs2146188 | 0.83[ASN][1000 genomes] |
| rs2245121 | 0.92[CEU][hapmap] |
| rs2246698 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2250135 | 0.85[ASN][1000 genomes] |
| rs2250360 | 0.83[ASN][1000 genomes] |
| rs2250478 | 0.80[ASN][1000 genomes] |
| rs2256167 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2256573 | 0.91[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2256581 | 1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2256588 | 0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2256703 | 1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2758551 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2758553 | 0.95[ASN][1000 genomes] |
| rs2758554 | 1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2758557 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2819105 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2819107 | 0.89[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7893691 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7902160 | 0.86[YRI][hapmap] |
| rs911887 | 0.81[ASW][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MBL1P | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| COMT | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014