SNP Report
Basic Infomation
| Name | rs2146188 dbSNP |
|---|---|
| Location | chr:10,81659961 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1923537 | 0.83[ASN][1000 genomes] |
| rs1923542 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2246698 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2250135 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2250360 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2250478 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2250992 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2254403 | 0.84[EUR][1000 genomes] |
| rs2256167 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2256573 | 0.82[ASN][1000 genomes] |
| rs2256581 | 0.90[ASN][1000 genomes] |
| rs2256588 | 0.82[ASN][1000 genomes] |
| rs2256703 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2758551 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2758553 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2758554 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2758557 | 0.83[ASN][1000 genomes] |
| rs2819105 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2819107 | 0.84[ASN][1000 genomes] |
| rs2819109 | 0.85[EUR][1000 genomes] |
| rs7893691 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MBL1P | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014