SNP Report
Basic Infomation
| Name | rs7476563 dbSNP |
|---|---|
| Location | chr:10,81735074 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10788338 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887327 | 0.82[ASN][1000 genomes] |
| rs11201011 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11201038 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2255601 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2341958 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2758545 | 0.80[EUR][1000 genomes] |
| rs2758547 | 0.80[EUR][1000 genomes] |
| rs2819096 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2819097 | 0.80[EUR][1000 genomes] |
| rs2819098 | 0.81[EUR][1000 genomes] |
| rs2819099 | 0.81[EUR][1000 genomes] |
| rs2819100 | 0.81[EUR][1000 genomes] |
| rs2819101 | 0.81[EUR][1000 genomes] |
| rs2819106 | 0.80[EUR][1000 genomes] |
| rs4281433 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4319455 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4335482 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs721917 | 0.95[ASN][1000 genomes] |
| rs7903576 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000235924 | Distal transcriptional regulation |
| SFTPD | Distal transcriptional regulation |
| ENSG00000225100 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014