SNP Report
Basic Infomation
| Name | rs7969677 dbSNP |
|---|---|
| Location | chr:12,40646948 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506155 | 1.00[CHB][hapmap] |
| rs10784451 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[ASN][1000 genomes] |
| rs10784532 | 1.00[CHB][hapmap] |
| rs10784599 | 1.00[ASW][hapmap] |
| rs10878258 | 0.87[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs10878278 | 0.93[CHB][hapmap];1.00[CHD][hapmap] |
| rs10878343 | 1.00[CHB][hapmap] |
| rs10878356 | 1.00[CHB][hapmap];0.87[MKK][hapmap] |
| rs10878372 | 1.00[CHB][hapmap];0.96[CHD][hapmap] |
| rs11175729 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11175843 | 1.00[CHB][hapmap] |
| rs11175935 | 1.00[CHB][hapmap] |
| rs11175958 | 1.00[CHB][hapmap] |
| rs11175966 | 1.00[CHB][hapmap] |
| rs11175985 | 1.00[ASW][hapmap] |
| rs11176118 | 1.00[CHB][hapmap] |
| rs11176153 | 1.00[CHB][hapmap] |
| rs11176418 | 0.93[CHB][hapmap] |
| rs12230685 | 0.94[GIH][hapmap] |
| rs12368229 | 1.00[CHB][hapmap] |
| rs12370083 | 1.00[ASW][hapmap] |
| rs17444223 | 1.00[CHB][hapmap] |
| rs17444730 | 0.93[CHB][hapmap] |
| rs17462055 | 1.00[CHB][hapmap] |
| rs17521005 | 1.00[YRI][hapmap] |
| rs2162471 | 1.00[CHB][hapmap] |
| rs2723264 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[ASN][1000 genomes] |
| rs7132187 | 1.00[CHB][hapmap] |
| rs7134379 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[ASN][1000 genomes] |
| rs7137173 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs715403 | 0.92[CHB][hapmap] |
| rs7303525 | 1.00[CHB][hapmap];0.81[CHD][hapmap] |
| rs7311850 | 1.00[CHB][hapmap] |
| rs7953143 | 0.89[GIH][hapmap] |
| rs7966550 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes] |
| rs7975693 | 0.89[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MUC19 | Distal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| GJC3 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014