SNP Report

Basic Infomation

Name	rs7137173 dbSNP
Location	chr:12,40766822
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506155	1.00[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs10784451	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs10784532	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs10878258	0.87[CHB][hapmap]
rs10878278	0.89[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs10878343	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs10878356	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.84[ASN][1000 genomes]
rs10878372	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.92[MEX][hapmap];0.86[ASN][1000 genomes]
rs10878434	0.89[CEU][hapmap];0.81[CHD][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11175843	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11175935	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11175958	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs11175966	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs11176118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11176153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11176154	0.88[ASN][1000 genomes]
rs11176165	0.88[ASN][1000 genomes]
rs11176418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12368229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17444223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17444730	1.00[CHB][hapmap]
rs17462055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2162471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2723264	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs61915610	0.88[ASN][1000 genomes]
rs7132187	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7134379	0.87[CHB][hapmap]
rs715403	0.92[CHB][hapmap];0.80[ASN][1000 genomes]
rs7303525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7311850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7966550	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs7969677	1.00[CHB][hapmap];0.85[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)