SNP Report
Basic Infomation
| Name | rs10878434 dbSNP |
|---|---|
| Location | chr:12,40758291 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10878258 | 0.88[CHB][hapmap] |
| rs11175843 | 0.89[CEU][hapmap] |
| rs11175935 | 0.89[CEU][hapmap] |
| rs11176118 | 0.89[CEU][hapmap] |
| rs11176153 | 0.89[CEU][hapmap] |
| rs11176418 | 0.89[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs12368229 | 0.89[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs17444223 | 0.89[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs17462055 | 0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes] |
| rs2162471 | 0.89[CEU][hapmap] |
| rs7134379 | 0.88[CHB][hapmap] |
| rs7137173 | 0.89[CEU][hapmap];0.81[CHD][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7303525 | 0.89[CEU][hapmap] |
| rs7311850 | 0.89[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014