SNP Report
Basic Infomation
| Name | rs7134379 dbSNP |
|---|---|
| Location | chr:12,40644874 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506155 | 0.87[CHB][hapmap];0.86[CHD][hapmap] |
| rs10784451 | 0.87[CHB][hapmap];0.89[CHD][hapmap] |
| rs10784452 | 0.81[AMR][1000 genomes] |
| rs10784532 | 0.87[CHB][hapmap] |
| rs10878247 | 0.88[CHB][hapmap] |
| rs10878258 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10878278 | 0.80[CHB][hapmap];0.89[CHD][hapmap] |
| rs10878343 | 0.87[CHB][hapmap] |
| rs10878356 | 0.87[CHB][hapmap] |
| rs10878372 | 0.87[CHB][hapmap];0.85[CHD][hapmap] |
| rs10878434 | 0.88[CHB][hapmap] |
| rs11175729 | 0.81[ASN][1000 genomes] |
| rs11175843 | 0.87[CHB][hapmap] |
| rs11175935 | 0.87[CHB][hapmap] |
| rs11175958 | 0.87[CHB][hapmap] |
| rs11175966 | 0.87[CHB][hapmap] |
| rs11176118 | 0.87[CHB][hapmap] |
| rs11176153 | 0.87[CHB][hapmap] |
| rs11176418 | 0.87[CHB][hapmap] |
| rs11564279 | 0.82[YRI][hapmap] |
| rs12230685 | 0.81[CHD][hapmap] |
| rs12368229 | 0.87[CHB][hapmap] |
| rs17444223 | 0.87[CHB][hapmap] |
| rs17444730 | 0.87[CHB][hapmap] |
| rs17462055 | 0.87[CHB][hapmap] |
| rs2162471 | 0.87[CHB][hapmap] |
| rs2723264 | 0.87[CHB][hapmap];0.89[CHD][hapmap] |
| rs6581622 | 0.82[CHB][hapmap] |
| rs7132187 | 0.87[CHB][hapmap] |
| rs7137173 | 0.87[CHB][hapmap] |
| rs7303525 | 0.87[CHB][hapmap] |
| rs7311850 | 0.87[CHB][hapmap] |
| rs7966550 | 0.87[CHB][hapmap];0.82[CHD][hapmap] |
| rs7969677 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CREB3L4 | Distal transcriptional regulation |
| SLC39A1 | Distal transcriptional regulation |
| MUC19 | Distal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014