SNP Report
Basic Infomation
| Name | rs12230685 dbSNP |
|---|---|
| Location | chr:12,40622790 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10454013 | 0.93[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap] |
| rs11175027 | 0.93[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap] |
| rs11175090 | 0.93[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap] |
| rs11175094 | 0.85[CHB][hapmap];0.83[JPT][hapmap] |
| rs11175106 | 0.93[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap] |
| rs11175409 | 0.83[ASN][1000 genomes] |
| rs11175843 | 1.00[YRI][hapmap] |
| rs11175935 | 1.00[YRI][hapmap] |
| rs17491786 | 1.00[YRI][hapmap] |
| rs17519594 | 1.00[YRI][hapmap] |
| rs7134379 | 0.81[CHD][hapmap] |
| rs7135815 | 0.93[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap] |
| rs7302006 | 0.86[CHB][hapmap] |
| rs7953143 | 1.00[ASW][hapmap];0.93[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7966132 | 0.87[ASN][1000 genomes] |
| rs7966741 | 0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap] |
| rs7969677 | 0.94[GIH][hapmap] |
| rs7975693 | 1.00[ASW][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014