SNP Report

Basic Infomation

Name	rs7975693 dbSNP
Location	chr:12,40588678
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10454013	0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs10877929	0.85[JPT][hapmap]
rs11174735	0.82[CHD][hapmap];0.85[JPT][hapmap]
rs11174998	0.80[ASN][1000 genomes]
rs11175021	0.80[ASN][1000 genomes]
rs11175027	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs11175090	0.86[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap]
rs11175094	0.83[JPT][hapmap]
rs11175106	0.86[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap]
rs11175409	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11175843	1.00[YRI][hapmap]
rs11175935	1.00[YRI][hapmap]
rs12228213	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs12230685	1.00[ASW][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs17491786	1.00[YRI][hapmap]
rs17519594	1.00[YRI][hapmap]
rs2708445	0.82[ASN][1000 genomes]
rs28370645	0.85[JPT][hapmap]
rs28370647	0.85[JPT][hapmap]
rs28370666	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs7135815	0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs7302006	0.92[MKK][hapmap]
rs7953143	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7966132	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7966741	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs7969677	0.89[GIH][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)