SNP Report

Basic Infomation

Name	rs7953143 dbSNP
Location	chr:12,40571905
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10454013	0.87[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10506141	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs10877929	0.80[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs11174735	0.80[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs11174998	0.83[ASN][1000 genomes]
rs11175021	0.83[ASN][1000 genomes]
rs11175027	0.87[CHB][hapmap];0.85[JPT][hapmap];0.96[MKK][hapmap];0.83[ASN][1000 genomes]
rs11175090	0.87[CHB][hapmap];0.85[JPT][hapmap];0.96[MKK][hapmap];0.82[ASN][1000 genomes]
rs11175094	0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11175106	0.87[CHB][hapmap];0.85[JPT][hapmap];0.96[MKK][hapmap];0.81[ASN][1000 genomes]
rs11175409	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12228213	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs12230685	1.00[ASW][hapmap];0.93[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2101144	0.82[ASN][1000 genomes]
rs2708445	0.85[ASN][1000 genomes]
rs28370645	0.80[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs28370647	0.80[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs28370666	0.80[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7135815	0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7302006	0.80[CHB][hapmap];0.92[MKK][hapmap]
rs7966132	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7966741	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7967369	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs7969677	0.89[GIH][hapmap]
rs7975693	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)