SNP Report
Basic Infomation
| Name | rs7966132 dbSNP |
|---|---|
| Location | chr:12,40583885 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10454013 | 0.84[ASN][1000 genomes] |
| rs10877929 | 0.81[ASN][1000 genomes] |
| rs11174735 | 0.81[ASN][1000 genomes] |
| rs11174998 | 0.82[ASN][1000 genomes] |
| rs11175021 | 0.82[ASN][1000 genomes] |
| rs11175027 | 0.82[ASN][1000 genomes] |
| rs11175090 | 0.81[ASN][1000 genomes] |
| rs11175094 | 0.81[ASN][1000 genomes] |
| rs11175106 | 0.80[ASN][1000 genomes] |
| rs11175409 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12230685 | 0.87[ASN][1000 genomes] |
| rs2101144 | 0.81[ASN][1000 genomes] |
| rs2708445 | 0.84[ASN][1000 genomes] |
| rs28370666 | 0.81[ASN][1000 genomes] |
| rs7135815 | 0.88[ASN][1000 genomes] |
| rs7953143 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7966741 | 0.81[ASN][1000 genomes] |
| rs7975693 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014